PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021502m
Common NameCISIN_1g021502mg, LOC102613900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Dof
Protein Properties Length: 312aa    MW: 33981.8 Da    PI: 9.3835
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021502mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.42.3e-3648105259
             zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                        + + lkcprCdstntkfCyynny+ sqPr+fCkaC+r+WtkGG+lrnvP+Gggr+ ++
  orange1.1g021502m  48 QAEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCKACKRHWTKGGTLRNVPIGGGRKSKR 105
                        56789************************************************87766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2349105IPR003851Zinc finger, Dof-type
PfamPF027017.6E-3251104IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.36352106IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105490IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGLSSKQVSS DGQGWSQSLL QAQTLELPKP ASVKRPLQQQ SSLNQQQQAE PLKCPRCDST  60
NTKFCYYNNY NKSQPRHFCK ACKRHWTKGG TLRNVPIGGG RKSKRLKTSD NAATSTATAT  120
ASRVSTHVAV QSQQQRQILP FPLGDDQKNL SDVPLYQPLI HPPSNLLESK GMGTNNINVG  180
NPFISSSLGI PQIQIQKYQS LTLPNHASAS SFNPTPSTIS NSFQRSASVI NYAGEITMED  240
PTNVINTTST TATSMPITIA SSSAVTQPWQ QVASTSSGTN NMTTSYWNWD DIDTFVSTDL  300
NIPWDDSDIK P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467841.10.0PREDICTED: dof zinc finger protein DOF1.4
TrEMBLA0A067GB420.0A0A067GB42_CITSI; Uncharacterized protein
STRINGVIT_00s0652g00010.t018e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.22e-29Dof family protein